PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g07290.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 155aa    MW: 17014.1 Da    PI: 8.9241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g07290.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20655255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa++ ++g
  Vang02g07290.3  6 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAARDFRG 55
                    59*******.**********8...557**********************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.19E-18665No hitNo description
SuperFamilySSF541717.19E-23664IPR016177DNA-binding domain
PROSITE profilePS5103224.302663IPR001471AP2/ERF domain
PfamPF008472.3E-14655IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-33664IPR001471AP2/ERF domain
SMARTSM003801.2E-36669IPR001471AP2/ERF domain
PRINTSPR003676.0E-12718IPR001471AP2/ERF domain
PRINTSPR003676.0E-122945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
LDKEIRYRGV RKRPWGRYAA EIRDPGKKTR VWLGTFDTAE EAARAYDAAA RDFRGAKAKT  60
NFPTHAELTH VARSPSQSST LESPSPPPPL DLTLTPLAAT GAFVFPVARP VVFFDAFARA  120
ESDSDSSSVV DYERVPHRRV LDLDLNVPPP PEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20763360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20363263ATERF1
3gcc_A3e-20363263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133234.13e-79hypothetical protein PHAVU_011G162900g
SwissprotO803409e-52ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLV7AK603e-79V7AK60_PHAVU; Uncharacterized protein
STRINGGLYMA06G35710.11e-68(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-29ethylene responsive element binding factor 4